IL_4V6N_150

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_150 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.1727

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V6N|1|BA|C|779
4V6N|1|BA|A|780
4V6N|1|BA|A|781
4V6N|1|BA|A|782
4V6N|1|BA|C|783
*
4V6N|1|BA|G|799
4V6N|1|BA|G|800
4V6N|1|BA|U|801
4V6N|1|BA|A|802
4V6N|1|BA|G|803

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BN

30S ribosomal protein S11

Chain BX

30S ribosomal protein S21