IL_4V6N_161

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_161 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.3313

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V6N|1|BA|G|1061
4V6N|1|BA|U|1062
4V6N|1|BA|C|1063
*
4V6N|1|BA|G|1193
4V6N|1|BA|U|1194
4V6N|1|BA|C|1195

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

mRNA

Chain BF

30S ribosomal protein S3

Chain BH

30S ribosomal protein S5

Chain BL

30S ribosomal protein S9

Chain BM

30S ribosomal protein S10