IL_4V6N_161
3D structure
- PDB id
- 4V6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6N_161 not in the Motif Atlas
- Geometric match to IL_4LFB_063
- Geometric discrepancy: 0.3313
- The information below is about IL_4LFB_063
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V6N|1|BA|G|1061
4V6N|1|BA|U|1062
4V6N|1|BA|C|1063
*
4V6N|1|BA|G|1193
4V6N|1|BA|U|1194
4V6N|1|BA|C|1195
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BC
- mRNA
- Chain BF
- 30S ribosomal protein S3
- Chain BH
- 30S ribosomal protein S5
- Chain BL
- 30S ribosomal protein S9
- Chain BM
- 30S ribosomal protein S10
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