IL_4V6N_166
3D structure
- PDB id
- 4V6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 4V6N|1|BA|A|1257, 4V6N|1|BA|A|1280, 4V6N|1|BA|C|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6N_166 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.4054
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V6N|1|BA|G|1255
4V6N|1|BA|A|1256
4V6N|1|BA|A|1257
4V6N|1|BA|G|1258
*
4V6N|1|BA|C|1277
4V6N|1|BA|G|1278
4V6N|1|BA|G|1279
4V6N|1|BA|A|1280
4V6N|1|BA|C|1281
4V6N|1|BA|C|1282
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain A2
- 50S ribosomal protein L31
- Chain BF
- 30S ribosomal protein S3
- Chain BL
- 30S ribosomal protein S9
- Chain BM
- 30S ribosomal protein S10
- Chain BQ
- 30S ribosomal protein S14
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