IL_4V6N_168

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_168 not in the Motif Atlas

Geometric match to IL_5LR3_002

Geometric discrepancy: 0.289

The information below is about IL_5LR3_002

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

4V6N|1|BA|C|1303
4V6N|1|BA|G|1304
4V6N|1|BA|G|1305
4V6N|1|BA|A|1306
4V6N|1|BA|U|1307
4V6N|1|BA|U|1308
*
4V6N|1|BA|A|1329
4V6N|1|BA|U|1330
4V6N|1|BA|G|1331
4V6N|1|BA|A|1332
4V6N|1|BA|A|1333
4V6N|1|BA|G|1334

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S13

Chain BV

30S ribosomal protein S19