IL_4V6N_189

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_189 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.3888

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V6N|1|AB|U|1851
4V6N|1|AB|U|1852
4V6N|1|AB|A|1853
4V6N|1|AB|A|1854
4V6N|1|AB|U|1855
4V6N|1|AB|U|1856
4V6N|1|AB|G|1857
4V6N|1|AB|A|1858
4V6N|1|AB|U|1859
4V6N|1|AB|G|1860
*
4V6N|1|AB|U|1882
4V6N|1|AB|U|1883
4V6N|1|AB|G|1884
4V6N|1|AB|A|1885
4V6N|1|AB|U|1886
4V6N|1|AB|C|1887
4V6N|1|AB|G|1888
4V6N|1|AB|A|1889
4V6N|1|AB|A|1890
4V6N|1|AB|G|1891

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1