IL_4V6N_199

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_199 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.4439

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

4V6N|1|AB|U|2847
4V6N|1|AB|G|2848
4V6N|1|AB|U|2849
4V6N|1|AB|A|2850
4V6N|1|AB|A|2851
4V6N|1|AB|G|2852
*
4V6N|1|AB|U|2865
4V6N|1|AB|U|2866
4V6N|1|AB|G|2867
4V6N|1|AB|A|2868
4V6N|1|AB|G|2869

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AP

50S ribosomal protein L17

Chain AR

50S ribosomal protein L19