IL_4V6N_214

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6N_214 not in the Motif Atlas

Homologous match to IL_4WF9_014

Geometric discrepancy: 0.2731

The information below is about IL_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4V6N|1|AB|U|293
4V6N|1|AB|A|294
4V6N|1|AB|G|295
*
4V6N|1|AB|C|343
4V6N|1|AB|A|344
4V6N|1|AB|A|345
4V6N|1|AB|A|346
4V6N|1|AB|A|347

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L29

Chain AW

50S ribosomal protein L24