IL_4V6O_014

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGAC*GC

Length

6 nucleotides

Bulged bases

4V6O|1|AA|G|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_014 not in the Motif Atlas

Geometric match to IL_4YAZ_008

Geometric discrepancy: 0.37

The information below is about IL_4YAZ_008

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V6O|1|AA|G|203
4V6O|1|AA|G|204
4V6O|1|AA|A|205
4V6O|1|AA|C|206
*
4V6O|1|AA|G|213
4V6O|1|AA|C|214

Current chains

Chain AA

16S ribosomal RNA

Nearby chains