IL_4V6O_023

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_023 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.5784

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6O|1|AA|G|450
4V6O|1|AA|A|451
4V6O|1|AA|A|452
4V6O|1|AA|G|453
4V6O|1|AA|G|454
4V6O|1|AA|G|455
*
4V6O|1|AA|C|477
4V6O|1|AA|A|478
4V6O|1|AA|U|479
4V6O|1|AA|U|480
4V6O|1|AA|G|481
4V6O|1|AA|A|482
4V6O|1|AA|C|483

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S16