IL_4V6O_026
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- 4V6O|1|AA|A|509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6O_026 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.2734
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
4V6O|1|AA|C|504
4V6O|1|AA|G|505
4V6O|1|AA|G|506
4V6O|1|AA|C|507
4V6O|1|AA|U|508
4V6O|1|AA|A|509
4V6O|1|AA|A|510
4V6O|1|AA|C|511
*
4V6O|1|AA|G|540
4V6O|1|AA|G|541
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- mRNA
- Chain AG
- 30S ribosomal protein S4
- Chain AH
- 30S ribosomal protein S5
- Chain AO
- 30S ribosomal protein S12
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