3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4V6O|1|AA|A|532, 4V6O|1|AA|U|534, 4V6O|1|AA|A|535
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6O_027 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.2819
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V6O|1|AA|G|515
4V6O|1|AA|PSU|516
4V6O|1|AA|G|517
4V6O|1|AA|C|518
4V6O|1|AA|C|519
4V6O|1|AA|A|520
4V6O|1|AA|G|521
*
4V6O|1|AA|C|528
4V6O|1|AA|G|529
4V6O|1|AA|G|530
4V6O|1|AA|U|531
4V6O|1|AA|A|532
4V6O|1|AA|A|533
4V6O|1|AA|U|534
4V6O|1|AA|A|535
4V6O|1|AA|C|536

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
Transfer RNA; tRNA
Chain AC
mRNA
Chain AF
30S ribosomal protein S3
Chain AG
30S ribosomal protein S4
Chain AO
30S ribosomal protein S12

Coloring options:


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