3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
GUGCU*G(2MG)CC
Length
9 nucleotides
Bulged bases
4V6O|1|AA|U|1049
QA status
Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6O_047 not in the Motif Atlas
Geometric match to IL_3WBM_003
Geometric discrepancy: 0.3382
The information below is about IL_3WBM_003
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

4V6O|1|AA|G|1048
4V6O|1|AA|U|1049
4V6O|1|AA|G|1050
4V6O|1|AA|C|1051
4V6O|1|AA|U|1052
*
4V6O|1|AA|G|1206
4V6O|1|AA|2MG|1207
4V6O|1|AA|C|1208
4V6O|1|AA|C|1209

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
Transfer RNA; tRNA
Chain AF
30S ribosomal protein S3
Chain AM
30S ribosomal protein S10
Chain AQ
30S ribosomal protein S14

Coloring options:


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