IL_4V6O_060

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_060 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.3044

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V6O|1|AA|G|1401
4V6O|1|AA|4OC|1402
4V6O|1|AA|C|1403
4V6O|1|AA|C|1404
*
4V6O|1|AA|G|1497
4V6O|1|AA|UR3|1498
4V6O|1|AA|A|1499
4V6O|1|AA|A|1500
4V6O|1|AA|C|1501

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

mRNA

Chain AD

Transfer RNA; tRNA

Chain BB

Large subunit ribosomal RNA; LSU rRNA