IL_4V6O_089

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

4V6O|1|BB|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_089 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.3313

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

4V6O|1|BB|U|702
4V6O|1|BB|U|703
4V6O|1|BB|G|704
4V6O|1|BB|A|705
4V6O|1|BB|A|706
4V6O|1|BB|G|707
*
4V6O|1|BB|U|724
4V6O|1|BB|G|725
4V6O|1|BB|G|726
4V6O|1|BB|A|727
4V6O|1|BB|G|728
4V6O|1|BB|G|729
4V6O|1|BB|A|730

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2