IL_4V6O_096

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_096 not in the Motif Atlas

Homologous match to IL_7RQB_028

Geometric discrepancy: 0.1605

The information below is about IL_7RQB_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

4V6O|1|BB|G|862
4V6O|1|BB|A|863
*
4V6O|1|BB|U|913
4V6O|1|BB|G|914
4V6O|1|BB|C|915

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BO

50S ribosomal protein L16

Chain BX

50S ribosomal protein L25

Chain BY

50S ribosomal protein L27