IL_4V6O_114

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

4V6O|1|BB|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|C|1196
4V6O|1|BB|G|1197
4V6O|1|BB|U|1198
4V6O|1|BB|U|1199
*
4V6O|1|BB|A|1246
4V6O|1|BB|A|1247
4V6O|1|BB|G|1248
4V6O|1|BB|U|1249
4V6O|1|BB|G|1250

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15

Chain BS

50S ribosomal protein L20