IL_4V6O_138

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

4V6O|1|BB|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_138 not in the Motif Atlas

Homologous match to IL_5J7L_311

Geometric discrepancy: 0.3568

The information below is about IL_5J7L_311

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4V6O|1|BB|C|1727
4V6O|1|BB|C|1728
*
4V6O|1|BB|G|1731
4V6O|1|BB|C|1732
4V6O|1|BB|G|1733

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains