IL_4V6O_142

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GUG*UAAAC

Length

8 nucleotides

Bulged bases

4V6O|1|BB|A|1900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_142 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2803

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V6O|1|BB|G|1840
4V6O|1|BB|U|1841
4V6O|1|BB|G|1842
*
4V6O|1|BB|U|1898
4V6O|1|BB|A|1899
4V6O|1|BB|A|1900
4V6O|1|BB|A|1901
4V6O|1|BB|C|1902

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2