IL_4V6O_150

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CUUGA*UCUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_150 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3849

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V6O|1|BB|C|2084
4V6O|1|BB|U|2085
4V6O|1|BB|U|2086
4V6O|1|BB|G|2087
4V6O|1|BB|A|2088
*
4V6O|1|BB|U|2231
4V6O|1|BB|C|2232
4V6O|1|BB|U|2233
4V6O|1|BB|G|2234
4V6O|1|BB|G|2235

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BZ

50S ribosomal protein L28