IL_4V6O_169

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_169 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.2977

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V6O|1|BB|C|2636
4V6O|1|BB|U|2637
4V6O|1|BB|G|2638
4V6O|1|BB|A|2639
4V6O|1|BB|G|2640
*
4V6O|1|BB|C|2774
4V6O|1|BB|G|2775
4V6O|1|BB|A|2776
4V6O|1|BB|G|2777
4V6O|1|BB|A|2778
4V6O|1|BB|U|2779
4V6O|1|BB|G|2780
4V6O|1|BB|A|2781
4V6O|1|BB|G|2782

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BL

50S ribosomal protein L13