IL_4V6O_172

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

4V6O|1|BB|U|2689, 4V6O|1|BB|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_172 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1961

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V6O|1|BB|U|2687
4V6O|1|BB|G|2688
4V6O|1|BB|U|2689
4V6O|1|BB|U|2690
4V6O|1|BB|C|2691
*
4V6O|1|BB|G|2718
4V6O|1|BB|G|2719
4V6O|1|BB|U|2720
4V6O|1|BB|A|2721
4V6O|1|BB|G|2722

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BP

50S ribosomal protein L17

Chain BR

50S ribosomal protein L19