IL_4V6O_181

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4V6O|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_181 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1532

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4V6O|1|AA|G|147
4V6O|1|AA|G|148
4V6O|1|AA|A|149
4V6O|1|AA|U|150
4V6O|1|AA|A|151
4V6O|1|AA|A|152
4V6O|1|AA|C|153
*
4V6O|1|AA|G|168
4V6O|1|AA|C|169
4V6O|1|AA|U|170
4V6O|1|AA|A|171
4V6O|1|AA|A|172
4V6O|1|AA|U|173
4V6O|1|AA|A|174
4V6O|1|AA|C|175

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

30S ribosomal protein S20