IL_4V6O_192
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- (5MC)AC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 4V6O|1|AA|A|1492, 4V6O|1|AA|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6O_192 not in the Motif Atlas
- Geometric match to IL_2ET8_001
- Geometric discrepancy: 0.3382
- The information below is about IL_2ET8_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
4V6O|1|AA|5MC|1407
4V6O|1|AA|A|1408
4V6O|1|AA|C|1409
*
4V6O|1|AA|G|1491
4V6O|1|AA|A|1492
4V6O|1|AA|A|1493
4V6O|1|AA|G|1494
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AB
- Transfer RNA; tRNA
- Chain AC
- mRNA
- Chain AO
- 30S ribosomal protein S12
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
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