IL_4V6O_199

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_199 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.4327

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6O|1|BB|G|1038
4V6O|1|BB|A|1039
4V6O|1|BB|A|1040
4V6O|1|BB|G|1041
*
4V6O|1|BB|C|1114
4V6O|1|BB|G|1115
4V6O|1|BB|G|1116
4V6O|1|BB|C|1117

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BO

50S ribosomal protein L16

Chain BX

50S ribosomal protein L25