IL_4V6O_208

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_208 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3041

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V6O|1|BB|C|1526
4V6O|1|BB|G|1527
4V6O|1|BB|A|1528
4V6O|1|BB|G|1529
4V6O|1|BB|G|1530
*
4V6O|1|BB|C|1541
4V6O|1|BB|U|1542
4V6O|1|BB|G|1543
4V6O|1|BB|A|1544
4V6O|1|BB|A|1545
4V6O|1|BB|G|1546

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains