3D structure

PDB id
4V6O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
14.7 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
4V6O|1|BB|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6O_209 not in the Motif Atlas
Homologous match to IL_7A0S_109
Geometric discrepancy: 0.2471
The information below is about IL_7A0S_109
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

4V6O|1|BB|G|1666
4V6O|1|BB|G|1667
4V6O|1|BB|A|1668
4V6O|1|BB|A|1669
4V6O|1|BB|C|1670
4V6O|1|BB|U|1671
4V6O|1|BB|A|1672
4V6O|1|BB|G|1673
4V6O|1|BB|G|1674
*
4V6O|1|BB|C|1990
4V6O|1|BB|U|1991
4V6O|1|BB|G|1992
4V6O|1|BB|U|1993
4V6O|1|BB|C|1994

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain BE
50S ribosomal protein L3
Chain BM
50S ribosomal protein L14
Chain BR
50S ribosomal protein L19

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