IL_4V6O_226

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_226 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.2232

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V6O|1|AA|G|887
4V6O|1|AA|G|888
4V6O|1|AA|A|889
4V6O|1|AA|G|890
4V6O|1|AA|U|891
4V6O|1|AA|A|892
4V6O|1|AA|C|893
4V6O|1|AA|G|894
*
4V6O|1|AA|U|905
4V6O|1|AA|A|906
4V6O|1|AA|A|907
4V6O|1|AA|A|908
4V6O|1|AA|A|909
4V6O|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S12