IL_4V6O_232

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

4V6O|1|BB|A|1321, 4V6O|1|BB|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_232 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.5323

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V6O|1|BB|C|1319
4V6O|1|BB|C|1320
4V6O|1|BB|A|1321
4V6O|1|BB|A|1322
4V6O|1|BB|C|1323
*
4V6O|1|BB|G|1331
4V6O|1|BB|G|1332
4V6O|1|BB|G|1333

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L22

Chain BV

50S ribosomal protein L23