IL_4V6O_237

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGU*AC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6O_237 not in the Motif Atlas

Geometric match to IL_8P9A_328

Geometric discrepancy: 0.2468

The information below is about IL_8P9A_328

Detailed Annotation

Single stack bend with bulge

Broad Annotation

Single stack bend with bulge

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V6O|1|BB|G|2120
4V6O|1|BB|G|2121
4V6O|1|BB|U|2122
*
4V6O|1|BB|A|2176
4V6O|1|BB|C|2177

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L1