IL_4V6P_022
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- GAAGGG*CAUUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6P_022 not in the Motif Atlas
- Homologous match to IL_5J7L_023
- Geometric discrepancy: 0.3159
- The information below is about IL_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70801.1
- Basepair signature
- cWW-cWW-L-R-tWW-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V6P|1|AA|G|450
4V6P|1|AA|A|451
4V6P|1|AA|A|452
4V6P|1|AA|G|453
4V6P|1|AA|G|454
4V6P|1|AA|G|455
*
4V6P|1|AA|C|477
4V6P|1|AA|A|478
4V6P|1|AA|U|479
4V6P|1|AA|U|480
4V6P|1|AA|G|481
4V6P|1|AA|A|482
4V6P|1|AA|C|483
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AS
- 30S ribosomal protein S16
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