IL_4V6P_039
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- GGAGUACGGC*GUUAAAAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6P_039 not in the Motif Atlas
- Geometric match to IL_6UFG_002
- Geometric discrepancy: 0.3878
- The information below is about IL_6UFG_002
- Detailed Annotation
- 10x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_43547.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V6P|1|AA|G|887
4V6P|1|AA|G|888
4V6P|1|AA|A|889
4V6P|1|AA|G|890
4V6P|1|AA|U|891
4V6P|1|AA|A|892
4V6P|1|AA|C|893
4V6P|1|AA|G|894
4V6P|1|AA|G|895
4V6P|1|AA|C|896
*
4V6P|1|AA|G|903
4V6P|1|AA|U|904
4V6P|1|AA|U|905
4V6P|1|AA|A|906
4V6P|1|AA|A|907
4V6P|1|AA|A|908
4V6P|1|AA|A|909
4V6P|1|AA|C|910
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AO
- 30S ribosomal protein S12
Coloring options: