3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
GAC*GUAC
Length
7 nucleotides
Bulged bases
4V6P|1|AA|A|1394
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6P_040 not in the Motif Atlas
Geometric match to IL_4V9F_097
Geometric discrepancy: 0.3565
The information below is about IL_4V9F_097
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

4V6P|1|AA|G|922
4V6P|1|AA|A|923
4V6P|1|AA|C|924
*
4V6P|1|AA|G|1392
4V6P|1|AA|U|1393
4V6P|1|AA|A|1394
4V6P|1|AA|C|1395

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AC
mRNA
Chain AH
30S ribosomal protein S5

Coloring options:


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