IL_4V6P_040
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- GAC*GUAC
- Length
- 7 nucleotides
- Bulged bases
- 4V6P|1|AA|A|1394
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6P_040 not in the Motif Atlas
- Geometric match to IL_4V9F_097
- Geometric discrepancy: 0.3565
- The information below is about IL_4V9F_097
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V6P|1|AA|G|922
4V6P|1|AA|A|923
4V6P|1|AA|C|924
*
4V6P|1|AA|G|1392
4V6P|1|AA|U|1393
4V6P|1|AA|A|1394
4V6P|1|AA|C|1395
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- mRNA
- Chain AH
- 30S ribosomal protein S5
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