IL_4V6P_056

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_056 not in the Motif Atlas

Geometric match to IL_5LR3_002

Geometric discrepancy: 0.2656

The information below is about IL_5LR3_002

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

4V6P|1|AA|C|1303
4V6P|1|AA|G|1304
4V6P|1|AA|G|1305
4V6P|1|AA|A|1306
4V6P|1|AA|U|1307
4V6P|1|AA|U|1308
*
4V6P|1|AA|A|1329
4V6P|1|AA|U|1330
4V6P|1|AA|G|1331
4V6P|1|AA|A|1332
4V6P|1|AA|A|1333
4V6P|1|AA|G|1334

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S13

Chain AV

30S ribosomal protein S19

Chain B2

50S ribosomal protein L31