IL_4V6P_076

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_076 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.2035

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V6P|1|BB|C|239
4V6P|1|BB|C|240
4V6P|1|BB|A|241
4V6P|1|BB|G|242
4V6P|1|BB|U|243
4V6P|1|BB|A|244
4V6P|1|BB|G|245
*
4V6P|1|BB|C|253
4V6P|1|BB|G|254
4V6P|1|BB|A|255
4V6P|1|BB|A|256
4V6P|1|BB|C|257
4V6P|1|BB|G|258

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L35

Chain BN

50S ribosomal protein L15