3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
UAG*CAAAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6P_079 not in the Motif Atlas
Homologous match to IL_4WF9_014
Geometric discrepancy: 0.2486
The information below is about IL_4WF9_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69440.3
Basepair signature
cWW-L-R-cSH-cWW
Number of instances in this motif group
3

Unit IDs

4V6P|1|BB|U|293
4V6P|1|BB|A|294
4V6P|1|BB|G|295
*
4V6P|1|BB|C|343
4V6P|1|BB|A|344
4V6P|1|BB|A|345
4V6P|1|BB|A|346
4V6P|1|BB|A|347

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain BW
50S ribosomal protein L24

Coloring options:


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