IL_4V6P_084

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V6P|1|BB|G|801, 4V6P|1|BB|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_084 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.2237

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6P|1|BB|G|674
4V6P|1|BB|A|675
4V6P|1|BB|A|676
4V6P|1|BB|A|677
4V6P|1|BB|C|678
*
4V6P|1|BB|G|799
4V6P|1|BB|A|800
4V6P|1|BB|G|801
4V6P|1|BB|A|802
4V6P|1|BB|U|803
4V6P|1|BB|A|804
4V6P|1|BB|G|805
4V6P|1|BB|C|806

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15