IL_4V6P_100

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGUCCCAAAG*CACC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_100 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2328

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6P|1|BB|G|1002
4V6P|1|BB|G|1003
4V6P|1|BB|U|1004
4V6P|1|BB|C|1005
4V6P|1|BB|C|1006
4V6P|1|BB|C|1007
4V6P|1|BB|A|1008
4V6P|1|BB|A|1009
4V6P|1|BB|A|1010
4V6P|1|BB|G|1011
*
4V6P|1|BB|C|1150
4V6P|1|BB|A|1151
4V6P|1|BB|C|1152
4V6P|1|BB|C|1153

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BL

50S ribosomal protein L13

Chain BS

50S ribosomal protein L20