3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CGAG*UGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6P_124 not in the Motif Atlas
Homologous match to IL_5J7L_303
Geometric discrepancy: 0.2629
The information below is about IL_5J7L_303
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

4V6P|1|BB|C|1526
4V6P|1|BB|G|1527
4V6P|1|BB|A|1528
4V6P|1|BB|G|1529
*
4V6P|1|BB|U|1542
4V6P|1|BB|G|1543
4V6P|1|BB|A|1544
4V6P|1|BB|A|1545
4V6P|1|BB|G|1546

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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