IL_4V6P_128

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

4V6P|1|BB|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_128 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.2824

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V6P|1|BB|A|1669
4V6P|1|BB|C|1670
4V6P|1|BB|U|1671
4V6P|1|BB|A|1672
4V6P|1|BB|G|1673
4V6P|1|BB|G|1674
*
4V6P|1|BB|C|1990
4V6P|1|BB|U|1991
4V6P|1|BB|G|1992
4V6P|1|BB|U|1993

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L14