IL_4V6P_136

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GUG*UAAAC

Length

8 nucleotides

Bulged bases

4V6P|1|BB|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_136 not in the Motif Atlas

Geometric match to IL_5M0H_002

Geometric discrepancy: 0.3078

The information below is about IL_5M0H_002

Detailed Annotation

Multiple bulged bases, near cWW

Broad Annotation

Multiple bulged bases, near cWW

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4V6P|1|BB|G|1840
4V6P|1|BB|U|1841
4V6P|1|BB|G|1842
*
4V6P|1|BB|U|1898
4V6P|1|BB|A|1899
4V6P|1|BB|A|1900
4V6P|1|BB|A|1901
4V6P|1|BB|C|1902

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2