IL_4V6P_138

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_138 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1807

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V6P|1|BB|G|1933
4V6P|1|BB|C|1934
*
4V6P|1|BB|G|1964
4V6P|1|BB|C|1965
4V6P|1|BB|A|1966
4V6P|1|BB|C|1967

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA