IL_4V6P_163
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6P_163 not in the Motif Atlas
- Homologous match to IL_7RQB_103
- Geometric discrepancy: 0.5571
- The information below is about IL_7RQB_103
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V6P|1|BB|C|2652
4V6P|1|BB|U|2653
4V6P|1|BB|A|2654
4V6P|1|BB|G|2655
4V6P|1|BB|U|2656
4V6P|1|BB|A|2657
4V6P|1|BB|C|2658
*
4V6P|1|BB|G|2663
4V6P|1|BB|G|2664
4V6P|1|BB|A|2665
4V6P|1|BB|C|2666
4V6P|1|BB|C|2667
4V6P|1|BB|G|2668
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain BH
- 50S ribosomal protein L6
Coloring options: