IL_4V6P_184

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4V6P|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_184 not in the Motif Atlas

Geometric match to IL_8C3A_456

Geometric discrepancy: 0.2683

The information below is about IL_8C3A_456

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.3

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

4V6P|1|AA|U|1052
4V6P|1|AA|G|1053
4V6P|1|AA|C|1054
4V6P|1|AA|A|1055
4V6P|1|AA|U|1056
*
4V6P|1|AA|A|1204
4V6P|1|AA|U|1205
4V6P|1|AA|G|1206

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain AC

mRNA

Chain AF

30S ribosomal protein S3

Chain AQ

30S ribosomal protein S14