IL_4V6P_191

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGAA*UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_191 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.2857

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

4V6P|1|BB|U|842
4V6P|1|BB|G|843
4V6P|1|BB|A|844
4V6P|1|BB|A|845
*
4V6P|1|BB|U|934
4V6P|1|BB|C|935
4V6P|1|BB|A|936

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L35