IL_4V6P_212

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CGCA*UGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_212 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2896

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6P|1|BB|C|2676
4V6P|1|BB|G|2677
4V6P|1|BB|C|2678
4V6P|1|BB|A|2679
*
4V6P|1|BB|U|2728
4V6P|1|BB|G|2729
4V6P|1|BB|C|2730
4V6P|1|BB|G|2731

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L14