IL_4V6Q_001
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- AUUGAA*UUAAU
- Length
- 11 nucleotides
- Bulged bases
- 4V6Q|1|AA|G|31
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6Q_001 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.3686
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4V6Q|1|AA|A|28
4V6Q|1|AA|U|29
4V6Q|1|AA|U|30
4V6Q|1|AA|G|31
4V6Q|1|AA|A|32
4V6Q|1|AA|A|33
*
4V6Q|1|AA|U|551
4V6Q|1|AA|U|552
4V6Q|1|AA|A|553
4V6Q|1|AA|A|554
4V6Q|1|AA|U|555
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AG
- 30S ribosomal protein S4
- Chain AO
- 30S ribosomal protein S12
Coloring options: