IL_4V6Q_027
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V6Q|1|AA|A|532, 4V6Q|1|AA|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6Q_027 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.3165
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V6Q|1|AA|G|515
4V6Q|1|AA|PSU|516
4V6Q|1|AA|G|517
4V6Q|1|AA|C|518
4V6Q|1|AA|C|519
4V6Q|1|AA|A|520
4V6Q|1|AA|G|521
*
4V6Q|1|AA|C|528
4V6Q|1|AA|G|529
4V6Q|1|AA|G|530
4V6Q|1|AA|U|531
4V6Q|1|AA|A|532
4V6Q|1|AA|A|533
4V6Q|1|AA|U|534
4V6Q|1|AA|A|535
4V6Q|1|AA|C|536
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AB
- Transfer RNA; tRNA
- Chain AC
- mRNA
- Chain AF
- 30S ribosomal protein S3
- Chain AG
- 30S ribosomal protein S4
- Chain AO
- 30S ribosomal protein S12
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