IL_4V6Q_035

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

4V6Q|1|AA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_035 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1681

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6Q|1|AA|U|662
4V6Q|1|AA|A|663
4V6Q|1|AA|G|664
4V6Q|1|AA|A|665
4V6Q|1|AA|G|666
*
4V6Q|1|AA|U|740
4V6Q|1|AA|G|741
4V6Q|1|AA|G|742
4V6Q|1|AA|A|743

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S6

Chain AR

30S ribosomal protein S15

Chain AU

30S ribosomal protein S18

Chain AX

30S ribosomal protein S21