IL_4V6Q_038
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- GGGAG*UC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6Q_038 not in the Motif Atlas
- Geometric match to IL_5J7L_036
- Geometric discrepancy: 0.2256
- The information below is about IL_5J7L_036
- Detailed Annotation
- Left turn
- Broad Annotation
- Left turn
- Motif group
- IL_29346.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
4V6Q|1|AA|G|774
4V6Q|1|AA|G|775
4V6Q|1|AA|G|776
4V6Q|1|AA|A|777
4V6Q|1|AA|G|778
*
4V6Q|1|AA|U|804
4V6Q|1|AA|C|805
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AN
- 30S ribosomal protein S11
- Chain AX
- 30S ribosomal protein S21
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 50S ribosomal protein L2
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