IL_4V6Q_041

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_041 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.2398

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V6Q|1|AA|G|887
4V6Q|1|AA|G|888
4V6Q|1|AA|A|889
4V6Q|1|AA|G|890
4V6Q|1|AA|U|891
4V6Q|1|AA|A|892
4V6Q|1|AA|C|893
4V6Q|1|AA|G|894
*
4V6Q|1|AA|U|905
4V6Q|1|AA|A|906
4V6Q|1|AA|A|907
4V6Q|1|AA|A|908
4V6Q|1|AA|A|909
4V6Q|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S12